View source: R/run_consensus_clustering.R
run_consensus_clustering | R Documentation |
Function runs consensus clustering for a pre-determined sequence of K.
run_consensus_clustering( cnr, maxK = 40, iters = 200, title = "cnr_ccp", innerLinkage = "ward.D2", finalLinkage = "ward.D2", seed = 2020.0314, verbose = TRUE, ... )
cnr |
a cnr object |
maxK |
maximum K, end of K sequence |
iters |
number of times the clustering runs |
title |
title for the consensus cluster map |
innerLinkage |
inner linkage, see ConsensusClusterPlus |
finalLinkage |
final linkage, see ConsensusClusterPlus |
seed |
seed of analysis |
verbose |
print out progress |
... |
additional parameters for ConsensusClusterPlus e.g. plot = "png" |
A cnr object that contains the output of ConsensusClusterPlus for the specified Ks.
ccp ConsensusClusterPlus object
data(cnr) cnr <- phyloCNR(cnr) cnr <- run_consensus_clustering(cnr, maxK = 6)
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