lookupCN: Lookup copy number data from bins

In SingerLab/gac: Genetic Analysis of Cells

Lookup copy number data from bins

Description

This function pulls the X copy number data based on coordinate information from the cnr$chromInfo

Usage

lookupCN(cnr, chr = 12, start = 69200804, end = 69246466)

Arguments

cnr	a cnr bundle
chr	a chromosome name, must match 'cnr$chromInfo$bin.chrom'
start	start coodinate
end	end coordinate

Value

Returns the X data for a set of chromosome coordinates

Examples

data(cnr)
coord <- data.frame(chr = 2, start = 550000, end = 600000)

lookupCN(cnr, chr = coord$chr, start = coord$start, end = coord$end)

SingerLab/gac documentation built on March 29, 2025, 4:38 p.m.