lookupCN: Lookup copy number data from bins

Description Usage Arguments Value Examples

View source: R/lookupCN.R

Description

This function pulls the X copy number data based on coordinate information from the cnr$chromInfo

Usage

1
lookupCN(cnr, chr = 12, start = 69200804, end = 69246466)

Arguments

cnr

a cnr bundle

chr

a chromosome name, must match 'cnr$chromInfo$bin.chrom'

start

start coodinate

end

end coordinate

Value

Returns the X data for a set of chromosome coordinates

Examples

1
2
3
4
data(cnr)
coord <- data.frame(chr = 2, start = 550000, end = 600000)

lookupCN(cnr, chr = coord$chr, start = coord$start, end = coord$end)

SingerLab/gac documentation built on Aug. 14, 2021, 10:57 a.m.