mark.genes: Mark genes

In SingerLab/gac: Genetic Analysis of Cells

Mark genes

Description

Produces a named list with gene name and bin.id to use in ComplexHeatmap::anno_mark

Usage

mark.genes(cnr, gene.list, identifier = "hgnc.symbol")

Arguments

cnr	the cnr bundle
gene.list	the list of genes you wish to mark
identifier	name of the column with gene identifiers

Value

returns a vector of named gene.list (gg) w/their rownames/bin.id

Examples

data(cnr)

aa <- mark.genes(cnr, gene.list = c("CDK4", "MDM2"))

## Not run: 
geneAnno <- ComplexHeatmap::rowAnnotation(genes = anno_mark(at = aa, labels = names(aa)))

## End(Not run)

SingerLab/gac documentation built on March 29, 2025, 4:38 p.m.