doKSpectral: Run Specral K to select optimum and maximum K from Consensus...
In SingerLab/gac: Genetic Analysis of Cells
doKSpectral R Documentation
Run Specral K to select optimum and maximum K from Consensus Clustering
Description
Run Specral K to select optimum and maximum K from Consensus Clustering
Usage
doKSpectral(cnr, ...)
Arguments
cnr
a cnr bundle, with 'ccp'
...
additional parameters passed
Value
doKSpectral returns two matrices
kStats a dataframe containing number of stable K clusters (spectral K) for every kCC (K parameter), and the maximum delta Lamdba.
eigenVals a data frame containing the eigen values for each kCC
Lastly, it returns optK, a vector containing the recomended kCC and the value of 'k' i.e. (spectral K). These are the kCC for the max number of k and max dLambdaMax
Author(s)
Nick Socci <soccin@mskcc.org>
References
Philip A. Knight (2008) The Sinkhorn–Knopp Algorithm: Convergence and Applications. SIAM Journal on Matrix Analysis and Applications 30(1), 261-275. doi: 10.1137/060659624
SingerLab/gac documentation built on March 23, 2024, 5:15 a.m.
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| doKSpectral | R Documentation |
Run Specral K to select optimum and maximum K from Consensus Clustering
Description
Run Specral K to select optimum and maximum K from Consensus Clustering
Usage
doKSpectral(cnr, ...)
Arguments
cnr |
a cnr bundle, with 'ccp' |
... |
additional parameters passed |
Value
doKSpectral returns two matrices
kStats a dataframe containing number of stable K clusters (spectral K) for every kCC (K parameter), and the maximum delta Lamdba.
eigenVals a data frame containing the eigen values for each kCC
Lastly, it returns optK, a vector containing the recomended kCC and the value of 'k' i.e. (spectral K). These are the kCC for the max number of k and max dLambdaMax
Author(s)
Nick Socci <soccin@mskcc.org>
References
Philip A. Knight (2008) The Sinkhorn–Knopp Algorithm: Convergence and Applications. SIAM Journal on Matrix Analysis and Applications 30(1), 261-275. doi: 10.1137/060659624
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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