get_cluster_profiles: Build a consensus copy number profile for each cluster or...

Description Usage Arguments Value

View source: R/get_cluster_profiles.R

Description

Build a consensus copy number profile for each cluster or clone

Usage

1
get_cluster_profiles(cnr, minimum_cells = 3)

Arguments

cnr

a cnr bundle containing a 'final_cluster' column in Y.

minimum_cells

minimum number of cells in a cluster, best if greater than 3 to estimate a median

Value

Function returns the cnr with three additional tables. * uclust : number of cells in each final_cluster, only clusters greater than the specified minimum number of cells is shown * DDRC.df: a matrix containing the representative profile for each 'final_cluster' at the bin level. * DDRC.g : interpolation of the DDRC.df at the gene level for each 'final_cluster'.


SingerLab/gac documentation built on July 22, 2021, 3:27 a.m.