gac: gac
In SingerLab/gac: Genetic Analysis of Cells
gac R Documentation
gac
Description
GAC is an open-source framework and toolkit for management and analysis of
genome wide copy number data. It provides a set of standard matrices that
are symultaneously manipulated by various functions to maintain syncronized
bin, gene, annotation, and qc information from a single-cell DNA sequencing
experiment. Efforts will be made to add support for same-cell G+T and
log-ratio data for the analysis of bulk DNA and RNA data from the same
samples.
Details
GAC is actively being developed and is currently in ALPHA pre-release.
My hope is that others will find this helpful for their copy number needs,
and share new methods.
The HeatmapCNR function in GAC implements Bray-Curtis disimilarity on
ComplexHeatmap as the default method to estimate cell-cell distances and
generate the heatmaps.
Author(s)
Rodrigo Gularte Merida gularter@mskcc.org
Source
https://github.com/SingerLab/gac
See Also
Useful links:
SingerLab/gac documentation built on March 23, 2024, 5:15 a.m.
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| gac | R Documentation |
gac
Description
GAC is an open-source framework and toolkit for management and analysis of genome wide copy number data. It provides a set of standard matrices that are symultaneously manipulated by various functions to maintain syncronized bin, gene, annotation, and qc information from a single-cell DNA sequencing experiment. Efforts will be made to add support for same-cell G+T and log-ratio data for the analysis of bulk DNA and RNA data from the same samples.
Details
GAC is actively being developed and is currently in ALPHA pre-release. My hope is that others will find this helpful for their copy number needs, and share new methods.
The HeatmapCNR function in GAC implements Bray-Curtis disimilarity on ComplexHeatmap as the default method to estimate cell-cell distances and generate the heatmaps.
Author(s)
Rodrigo Gularte Merida gularter@mskcc.org
Source
https://github.com/SingerLab/gac
See Also
Useful links:
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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