pull_gene_details: Pull gene details for a set of genes

In SingerLab/gac: Genetic Analysis of Cells

Pull gene details for a set of genes

Description

This function subsets the gene index for a given set of genes

Usage

pull_gene_details(
  cnr,
  genes = c("MDM2", "CDK4"),
  show.columns = NULL,
  identifier = "hgnc.symbol"
)

Arguments

cnr	a cnr bundle
genes	a list of genes
show.columns	columns of gene.index to show
identifier	gene identifier hgnc.symbol or ensembl_gene_id. default hgnc.symbol

Value

Returns the subset of the 'gene.index' table for the genomic region.

Examples

data(cnr)

pull_gene_details(cnr)

pull_gene_details(cnr,
  genes = c("JUN", "MDM2", "CDK4"),
  show.columns = c("hgnc.symbol", "bin.id", "gene_biotype"))

pull_gene_details(cnr,
  genes = c("ENSG00000177606", "ENSG00000135446", "ENSG00000135679"),
  identifier = "ensembl_gene_id",
  show.columns = c("hgnc.symbol", "bin.id", "gene_biotype"))

SingerLab/gac documentation built on March 29, 2025, 4:38 p.m.