pull_gene_details: Pull gene details for a genomic region

In SingerLab/gac: Genetic Analysis of Cells

Pull gene details for a genomic region

Description

This function subsets the gene index for a genomic region of interest.

Usage

pull_gene_details(cnr, coord = "12:69200804:69246466")

Arguments

cnr	a cnr bundle
coord	genomic region in ensembl format

Value

Returns the subset of the 'gene.index' table for the genomic region.

Examples

data(cnr)
coord <- "12:69200804:69246466"

pull_gene_details(cnr, coord = coord)

coords <- c("1:170120554:172941951",
          "12:69200804:69246466")

do.call(rbind, lapply(coords, function(rr)
                     pull_gene_details(cnr, coord = rr)))

SingerLab/gac documentation built on Oct. 14, 2022, 4:09 a.m.