plot_sK: plot kCC vs sK plot kParameter, and stable K from kStats

In SingerLab/gac: Genetic Analysis of Cells

plot kCC vs sK plot kParameter, and stable K from kStats

Description

plot kCC vs sK plot kParameter, and stable K from kStats

Usage

plot_sK(
  cnr,
  kCC = NULL,
  sK = NULL,
  pch = 21,
  bg = "gray",
  xaxs = "i",
  yaxs = "i",
  bty = "l",
  xpd = TRUE,
  xlab = "k Parameter (kCC)",
  ylab = "k Stable (kS)",
  segment.col = "#005EB8",
  segment.spacing = -0.8,
  segment.lwd = 1.8,
  highlight.col = "#282828",
  highlight.cex = 1.1,
  highlight.pch = 16,
  ...
)

Arguments

cnr	a cnr bundle
kCC	kCC, when NULL, kCC is taken from 'optK'
sK	sK, when NULL kS is taken from optK
pch	pch for all points, default is 21
bg	background color for all points, default is "gray"
xaxs	x axis parameter see par, default is "i"
yaxs	y axis parameter see par, default is "i"
bty	boxtype par, default is "l"
xpd	allow margin text margin text par, default is TRUE
xlab	x axis label, default is "k Parameter (kCC)"
ylab	y axis label, default is "k Stable (kS)"
segment.col	segment line color, default is Scotish blue "#005EB8"
segment.spacing	segment spacing before highighted point, default is -0.8
segment.lwd	segment line width, default 1.8
highlight.col	color of a kCC /kS point, default is black "#282828"
highlight.cex	character expansion of a kCC /kS point, default is 1.1
highlight.pch	plot character of a kCC /kS point, default is 16
...	other parameters passed to plot

SingerLab/gac documentation built on March 23, 2024, 5:15 a.m.