plot_lr: Manhattan plot of logistic regression output

In SingerLab/gac: Genetic Analysis of Cells

Manhattan plot of logistic regression output

Description

Manhattan plot of logistic regression output

Usage

plot_lr(
  cnr,
  pval = "LL.vs.SCL.lr.p.value",
  sig.threshold = 10^-8,
  pch = 21,
  cex = 0.64,
  ylab = expression(-Log[10] ~ P - value),
  xlab = "HSA Genome",
  ...
)

Arguments

cnr	a cnr bundle
pval	character, name of the column in the phenotype matrix (Y) containing p-values
sig.threshold	numeric, significance threshold to use
pch	plot character, default 21
cex	character, expansion, default 0.64
ylab	character, y-axis label
xlab	character, x-axis label
...	additional arguments passed to 'plot'

Value

A manhattan plot with p-values for e.g. logistic regresion or other comparisons

SingerLab/gac documentation built on March 23, 2024, 5:15 a.m.