plot_lr: Manhattan plot of logistic regression output

View source: R/logistic_reg_histology.R

plot_lrR Documentation

Manhattan plot of logistic regression output

Description

Manhattan plot of logistic regression output

Usage

plot_lr(
  cnr,
  pval = "LL.vs.SCL.lr.p.value",
  sig.threshold = 10^-8,
  pch = 21,
  cex = 0.64,
  ylab = expression(-Log[10] ~ P - value),
  xlab = "HSA Genome",
  ...
)

Arguments

cnr

a cnr bundle

pval

character, name of the column in the phenotype matrix (Y) containing p-values

sig.threshold

numeric, significance threshold to use

pch

plot character, default 21

cex

character, expansion, default 0.64

ylab

character, y-axis label

xlab

character, x-axis label

...

additional arguments passed to 'plot'

Value

A manhattan plot with p-values for e.g. logistic regresion or other comparisons


SingerLab/gac documentation built on Oct. 14, 2022, 4:09 a.m.