View source: R/logistic_reg_histology.R
plot_lr | R Documentation |
Manhattan plot of logistic regression output
plot_lr(
cnr,
pval = "LL.vs.SCL.lr.p.value",
sig.threshold = 10^-8,
pch = 21,
cex = 0.64,
ylab = expression(-Log[10] ~ P - value),
xlab = "HSA Genome",
...
)
cnr |
a cnr bundle |
pval |
character, name of the column in the phenotype matrix (Y) containing p-values |
sig.threshold |
numeric, significance threshold to use |
pch |
plot character, default 21 |
cex |
character, expansion, default 0.64 |
ylab |
character, y-axis label |
xlab |
character, x-axis label |
... |
additional arguments passed to 'plot' |
A manhattan plot with p-values for e.g. logistic regresion or other comparisons
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