qc: Quality control annotation

Description Usage Format Source

Description

A dataset containing the the quality control of single-cell data. The Y matrix and QC matrix are quite similar. I like to think that Y are specific experimental phenotypes that one would like to gain biological insights into. QC is more adequate for technical variation, weather from manipulation and batch processing of samples, and/or biological such as expected ploidy from flow cytometry indexed FCS file.

I think that good QC data is a reflection of good laboratory notes, and practices. They can provide additional support to make decisions such as including or excluding certain samples. Hence why it's a required parameter in the CNR.

Usage

1

Format

A data frame n.cell rows x qc.metrics columns

Source

https://github.com/SingerLab/GAC


SingerLab/gac documentation built on Aug. 14, 2021, 10:57 a.m.