vdjHeatmap: Heatmap of cells with VDJ recombination

Description Usage Arguments Value Examples

View source: R/vdjHeatmap.R

Description

Heatmap of cells with VDJ recombination

Usage

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vdjHeatmap(cnr, vdj.genes = NULL, vdjGeneAnno = NULL, vdjCellAnno = NULL, ...)

Arguments

cnr

a cnir bundle

vdj.genes

list of VDJ genes. By default is set to NULL, vdj.genes is the union of T-cell Receptor and B-cell Receptor genes (i.e. TR, IG genes, used in genotype_vdj)

vdjGeneAnno

HeatmapAnnotation object to annotate gene attributes

vdjCellAnno

rowAnnotation object to annotate cells

...

additional arguments passed to ComplexHeatmap::Heatmap

Value

Returns a heatmap of VDJ cells with rows as cells, and TR/IG genes as columns. Heatmap is split by chromosome name, and cell types are annotated on the left

Examples

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SingerLab/gac documentation built on Aug. 14, 2021, 10:57 a.m.