setBrayClusters: Set clusters using one-cell and multi-cell height...

In SingerLab/gac: Genetic Analysis of Cells

Set clusters using one-cell and multi-cell height intersection

Description

Set clusters using one-cell and multi-cell height intersection

Usage

setBrayClusters(cnr, tree.height = NULL, prefix = "C", ...)

Arguments

cnr	a cnr bundle
tree.height	height of the tree optClust
prefix	a prefix to append before the cluster number
...	additional parameters passed to optClust

Value

Returns a cnr object with cluster membership based on Bray-Curtis Ward.D2 heirarchical clustering. If hieght is NULL, then the the tree height is calculated using minimum.intersect. Where optimal height is the value at the intersect between the number of one-cell and multi-cell clusters.

SingerLab/gac documentation built on Oct. 14, 2022, 4:09 a.m.