calc_score_test: Function to calculate the score test for given expected...
In Struglab/RVS: Robust Variance Score (RVS) test for association of variants from next generation sequence data with binary traits using external controls
Description
Usage
Arguments
Value
Description
This function calcuates the score test T=S^2/var(S), for a given j, S_j=∑_i (Y_i-bar(Y))E(G_{ij}|D_{ij})=∑_{case}(1-bar(Y))E(G|D)-∑_{cont}bar(Y)E(G|D). It is called in regScore_perm.
Usage
1
calc_score_test(M1, M2)
Arguments
M1
a vector of the expected genotype probability for case E(G_{ij}|D_{ij}) on one snp
M2
a vector of the expected genotype probability for control E(G_{ij}|D_{ij}) on one snp
Value
the score test statistic calculated from M1 and M2
Struglab/RVS documentation built on May 9, 2019, 3:11 p.m.
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Description Usage Arguments Value
Description
This function calcuates the score test T=S^2/var(S), for a given j, S_j=∑_i (Y_i-bar(Y))E(G_{ij}|D_{ij})=∑_{case}(1-bar(Y))E(G|D)-∑_{cont}bar(Y)E(G|D). It is called in regScore_perm.
Usage
1 | calc_score_test(M1, M2)
|
Arguments
M1 |
a vector of the expected genotype probability for case E(G_{ij}|D_{ij}) on one snp |
M2 |
a vector of the expected genotype probability for control E(G_{ij}|D_{ij}) on one snp |
Value
the score test statistic calculated from M1 and M2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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