regScore_rare1: It calls functions...
In Struglab/RVS: Robust Variance Score (RVS) test for association of variants from next generation sequence data with binary traits using external controls
Description
Usage
Arguments
Value
Description
It calls functions calc_ScoreV,calc_ScoreV_RVS,calc_ScoreV_likely,test_CAST, test_Calpha,sample_bootstrap
Usage
1
regScore_rare1(Y, X, njoint = 5, nperm)
Arguments
Y
- phenotype value, 1-cases and 0-controls
X
- matrix of conditional expected values/genotype calls for J variants, it has dimensions n by J, J - number of variants, n - sample size
njoint
number of rare variants to be grouped together
nperm
- number of bootstrap
Value
two p-values for CAST and C-alpha
Struglab/RVS documentation built on May 9, 2019, 3:11 p.m.
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Description Usage Arguments Value
Description
It calls functions calc_ScoreV,calc_ScoreV_RVS,calc_ScoreV_likely,test_CAST, test_Calpha,sample_bootstrap
Usage
1 | regScore_rare1(Y, X, njoint = 5, nperm)
|
Arguments
Y |
- phenotype value, 1-cases and 0-controls |
X |
- matrix of conditional expected values/genotype calls for J variants, it has dimensions n by J, J - number of variants, n - sample size |
njoint |
number of rare variants to be grouped together |
nperm |
- number of bootstrap |
Value
two p-values for CAST and C-alpha
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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