get_allele_frq: Function to calculate the allele frequency from additive...
In Struglab/RVS: Robust Variance Score (RVS) test for association of variants from next generation sequence data with binary traits using external controls
Description
Usage
Arguments
Value
Description
Function to calculate the allele frequency from additive coding genotype, the number of allele is not necessarily for minor allele. For people know plink, there is another option to calcualte the MAF.
Usage
1
Arguments
M
the additive coding genotype, a matrix with column for each variant
Value
a vector of allele frequency calculated based on the non-missing data
Struglab/RVS documentation built on May 9, 2019, 3:11 p.m.
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Description Usage Arguments Value
Description
Function to calculate the allele frequency from additive coding genotype, the number of allele is not necessarily for minor allele. For people know plink, there is another option to calcualte the MAF.
Usage
1 |
Arguments
M |
the additive coding genotype, a matrix with column for each variant |
Value
a vector of allele frequency calculated based on the non-missing data
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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