Files in Struglab/RVS
Robust Variance Score (RVS) test for association of variants from next generation sequence data with binary traits using external controls
DESCRIPTION
NAMESPACE
R/Raw_process.R
R/generate_seqdata.R
R/help_assoc_test.R
R/help_gener_seqdata.R
R/help_vcf.R
R/sequence_parellel.R
R/tests.R
README.md
RVS.Rproj
RVS_manual_Oct2016.pdf
example/caseID.txt
example/example_1000snps.vcf
example/example_additive_nofail.raw
example/sample1.map
example/sample1.ped
example/sample2.map
example/sample2.ped
inst/CITATION
inst/doc/RVS_manual_Mar1.pdf
inst/extdata/caseID.txt
inst/extdata/example_1000snps.vcf
inst/extdata/example_additive_nofail.bim
inst/extdata/example_additive_nofail.raw
man/.Rapp.history
man/RVS_asy.Rd
man/RVS_btrap.Rd
man/RVS_rare.Rd
man/RVS_rare1.Rd
man/RVS_rare2.Rd
man/calc_EG.Rd
man/calc_EG_Var.Rd
man/calc_EG_Var_general.Rd
man/calc_EG_general.Rd
man/calc_EM.Rd
man/calc_Mr.Rd
man/calc_ScoreV.Rd
man/calc_ScoreV_RVS.Rd
man/calc_ScoreV_likely.Rd
man/calc_ScoreV_regVar.Rd
man/calc_centralize_matrix.Rd
man/calc_pobs_ndepth.Rd
man/calc_psingle.Rd
man/calc_robust_Var.Rd
man/calc_score_test.Rd
man/calc_score_test1.Rd
man/calc_simu_exp.Rd
man/check_hom_matrix.Rd
man/clist.Rd
man/combine_twogeno.Rd
man/common_coord.Rd
man/convert.Rd
man/cor.X.function.Rd
man/filter_VCF_SNPs.Rd
man/filter_by_miss.Rd
man/filter_genocall.Rd
man/generate_seq_1ind.Rd
man/generate_seqdata_1var.Rd
man/generate_seqdata_OR.Rd
man/generate_seqdata_OR1.Rd
man/geno_add_2pheno.Rd
man/geno_process.Rd
man/get_IDs.Rd
man/get_allele_frq.Rd
man/get_exp_MAF.Rd
man/get_exp_geno.Rd
man/get_likelihood_vcf.Rd
man/get_lsingle_vcf.Rd
man/minor_allele.Rd
man/odds.2.probs.Rd
man/ped_2_additive.Rd
man/rbindlist.Rd
man/regScore_Rao.Rd
man/regScore_perm.Rd
man/regScore_rare.Rd
man/regScore_rare1.Rd
man/reset_minor_additive.Rd
man/sample_bootstrap.Rd
man/seq_call.Rd
man/seq_eg_freq.Rd
man/seqdata_nvar.Rd
man/sim.corr.binary.data.Rd
man/snp_true_2T.Rd
man/subset_ind.Rd
man/subset_snp.Rd
man/test_CAST.Rd
man/test_Calpha.Rd
man/test_Hotelling.Rd
man/vcf_process.Rd
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