Description Usage Arguments Value
It calls functions calc_ScoreV
,calc_ScoreV_RVS
,calc_ScoreV_likely
,test_CAST
, test_Calpha
,sample_bootstrap
1 2 | RVS_rare1(Y, X, P, njoint = 5, nboot, RVS = "TRUE", hom = 1,
multiplier = 1, snp_loop = 1)
|
Y |
- phenotype value, 1-cases and 0-controls |
X |
- matrix of conditional expected values, it has dimensions n by J, J - number of variants, n - sample size |
P |
- genotype frequency for J variants P(G=0), P(G=1) and P(G=2), J by 3 matrix |
njoint |
- number of SNPs grouping together for one test, default is 5 |
nboot |
- number of bootstrap |
RVS, |
logic variable to indicate the estimation of variance of the score statistic. |
two p-values for CAST and C-alpha
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