Description Usage Arguments Value
Function to combine two sets of ped pairs for two samples
1 | combine_twogeno(file1, file2, keep1 = NA, keep2 = NA, missing_cut = 0.5)
|
file1 |
the file name for the first sample before the extension. Eg. file1=sample1 if the file names are sample1.ped/map |
file2 |
the file name for the second sample before the extension. Eg. file1=sample2 if the file names are sample2.ped/map |
keep1 |
if only a subset of sample1 is needed in the final analyis, keep1=1, ow, keep1=NA |
keep2 |
if only a subset of sample2 is needed in the final analyis, keep2=1, ow, keep2=NA |
missing_cut |
the missing rate to remove the high-missing variants |
a list include data sets 'common' and 'rare' for common or rare variants and 'snp.Nomiss' for the SNPs kept in common and rare.
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