Description Usage Arguments Value
Function to simulate data for one variant by given parameters
1 2 | generate_seqdata_OR1(N, preval, ncase, ncont, mafco, OR, mdcase, sddcase,
mdcont, sddcont, me, sde)
|
N |
population size |
preval |
prevalence rate for the disease |
ncase |
the number of case |
ncont |
the number of controls |
mafco |
MAF for controls |
OR |
the odds ratio |
mdcase, |
average read depth in cases (double) >0#' @param sddcase, standard deviation of read depth in cases (double) >0 |
mdcont, |
average read depth in controls (double) >0 |
sddcont, |
standard deviation of read depth in controls (double) >0#' @param me, average error rate, probability that sequence call is wrong (double) >0 |
sde, |
standard deviation of error rate (double) >0 |
Ncont |
number of controls |
MM - conditional expected value E(Gij|Dij)
P -estimated genotype frequencies P(G=0), P(G=1), P(G=2)
G - true genotype from which sequence data generated
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