API for Struglab/RVS
Robust Variance Score (RVS) test for association of variants from next generation sequence data with binary traits using external controls

Global functions
RVS_asy Man page Source code
RVS_btrap Man page Source code
RVS_rare Man page Source code
RVS_rare1 Man page Source code
RVS_rare2 Man page Source code
calc_EG Man page Source code
calc_EG_Var Man page Source code
calc_EG_Var_general Man page Source code
calc_EG_general Man page Source code
calc_EM Man page Source code
calc_Mr Man page Source code
calc_ScoreV Man page Source code
calc_ScoreV_RVS Man page Source code
calc_ScoreV_likely Man page Source code
calc_ScoreV_regVar Man page Source code
calc_centralize_matrix Man page Source code
calc_pobs_ndepth Man page Source code
calc_psingle Man page Source code
calc_robust_Var Man page Source code
calc_score_test Man page Source code
calc_score_test1 Man page Source code
calc_simu_exp Man page Source code
check_hom_matrix Man page Source code
clist Man page Source code
combine_twogeno Man page Source code
common_coord Man page Source code
convert Man page Source code
cor.X.function Man page Source code
filter_VCF_SNPs Man page Source code
filter_by_miss Man page Source code
filter_genocall Man page Source code
generate_seq_1ind Man page Source code
generate_seqdata_1var Man page Source code
generate_seqdata_OR Man page Source code
generate_seqdata_OR1 Man page Source code
geno_add_2pheno Man page Source code
geno_process Man page Source code
get_IDs Man page Source code
get_allele_frq Man page Source code
get_exp_MAF Man page Source code
get_exp_geno Man page Source code
get_likelihood_vcf Man page Source code
get_lsingle_vcf Man page Source code
minor_allele Man page Source code
odds.2.probs Man page Source code
ped_2_additive Man page Source code
rbindlist Man page Source code
regScore_Rao Man page Source code
regScore_perm Man page Source code
regScore_rare Man page Source code
regScore_rare1 Man page Source code
reset_minor_additive Man page Source code
sample_bootstrap Man page Source code
seq_call Man page Source code
seq_eg_freq Man page Source code
seqdata_nvar Man page Source code
sim.corr.binary.data Man page Source code
snp_true_2T Man page Source code
subset_ind Man page Source code
subset_snp Man page Source code
test_CAST Man page Source code
test_Calpha Man page Source code
test_Hotelling Man page Source code
vcf_process Man page Source code
Struglab/RVS documentation built on May 10, 2017, 3:34 p.m.