subset_ind: Function to take a subset the samples from a larger genotype...
In Struglab/RVS: Robust Variance Score (RVS) test for association of variants from next generation sequence data with binary traits using external controls
Description
Usage
Arguments
Value
Description
This function will take a subset of samples' genotype data from a larger dataset, only return the genotype for the wanted individuals.
Similar as the option –keep in plink.
Usage
1
subset_ind(path1, path2)
Arguments
path1
path and file name of the larger genotype files where subset is taken from, ped file is prefered
path2
the file including the list of IDs for individuals to be kept
Value
a list including the genotype data matrix (geno1) and a interger for the number of samples (n1).
Struglab/RVS documentation built on May 9, 2019, 3:11 p.m.
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Description Usage Arguments Value
Description
This function will take a subset of samples' genotype data from a larger dataset, only return the genotype for the wanted individuals. Similar as the option –keep in plink.
Usage
1 | subset_ind(path1, path2)
|
Arguments
path1 |
path and file name of the larger genotype files where subset is taken from, ped file is prefered |
path2 |
the file including the list of IDs for individuals to be kept |
Value
a list including the genotype data matrix (geno1) and a interger for the number of samples (n1).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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