check_hom_matrix: Function to remove the homozygosity of a rare SNP in case or...
In Struglab/RVS: Robust Variance Score (RVS) test for association of variants from next generation sequence data with binary traits using external controls
Description
Usage
Arguments
Value
Description
Given the original case or control genotype matrix, return the edited matrix
Usage
1
check_hom_matrix(X, hom = 1, multiplier = 1)
Arguments
X
the expected condidtional genotype probablity matrix for grouped rare variants
hom
with value 1 or 2. 1 means making changes with the 1st nonNA element, 2 means making changes with a random nonNA element
multiplier
with value 1 or 2, 1 is dividing by 2 and 2 is mulitpling by 2.
Value
newX the edited expected condidtional genotype probablity matrix
Struglab/RVS documentation built on May 9, 2019, 3:11 p.m.
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Description Usage Arguments Value
Description
Given the original case or control genotype matrix, return the edited matrix
Usage
1 | check_hom_matrix(X, hom = 1, multiplier = 1)
|
Arguments
X |
the expected condidtional genotype probablity matrix for grouped rare variants |
hom |
with value 1 or 2. 1 means making changes with the 1st nonNA element, 2 means making changes with a random nonNA element |
multiplier |
with value 1 or 2, 1 is dividing by 2 and 2 is mulitpling by 2. |
Value
newX the edited expected condidtional genotype probablity matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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