compress_and_index_vcf: Compress and index vcf file
In TearsWillFall/variantCall: An implementation of a wrapper for variant calling using MuTECT2 and Platypus GNU/Unix based systems
Description
This function takes an uncompressed vcf file and uses bgzip and tabix to
compress and index the file while preserving the original file
Usage
1
2
3
4
5
6
compress_and_index_vcf(
bin_path = "tools/htslib/bgzip",
bin_path2 = "tools/htslib/tabix",
vcf = "",
output_dir = ""
)
Arguments
vcf
REQUIRED Path to VCF to compress
output_dir
OPTIONAL Path to output directory
TearsWillFall/variantCall documentation built on Oct. 15, 2021, 8:51 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
This function takes an uncompressed vcf file and uses bgzip and tabix to compress and index the file while preserving the original file
Usage
1 2 3 4 5 6 | compress_and_index_vcf(
bin_path = "tools/htslib/bgzip",
bin_path2 = "tools/htslib/tabix",
vcf = "",
output_dir = ""
)
|
Arguments
vcf |
REQUIRED Path to VCF to compress |
output_dir |
OPTIONAL Path to output directory |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.