plot_allelic_imbalance: This function generates a plot of allelic imbalance from...
In TearsWillFall/variantCall: An implementation of a wrapper for variant calling using MuTECT2 and Platypus GNU/Unix based systems
Description
This function takes the path to the directory with CLONET output, as well as a tab separated file with
sample and gene info and generates a plot of celularity and ploidy levels in the samples
Usage
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plot_allelic_imbalance(
clonet_dir = "",
sample_data = "",
output_dir = "",
gene_data = "",
jobs = 1,
threads = 3
)
Arguments
clonet_dir
Path to clonet output directory
sample_data
Path to file with sample info
output_dir
Path to output directory.
gene_data
Path to file with gene info
jobs
Number of jobs to run.
threads
Number of threads.
TearsWillFall/variantCall documentation built on Oct. 15, 2021, 8:51 p.m.
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Description
This function takes the path to the directory with CLONET output, as well as a tab separated file with sample and gene info and generates a plot of celularity and ploidy levels in the samples
Usage
1 2 3 4 5 6 7 8 | plot_allelic_imbalance(
clonet_dir = "",
sample_data = "",
output_dir = "",
gene_data = "",
jobs = 1,
threads = 3
)
|
Arguments
clonet_dir |
Path to clonet output directory |
sample_data |
Path to file with sample info |
output_dir |
Path to output directory. |
gene_data |
Path to file with gene info |
jobs |
Number of jobs to run. |
threads |
Number of threads. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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