split_vcf: Splits multisample VCF file into multiple VCFs

In TearsWillFall/variantCall: An implementation of a wrapper for variant calling using MuTECT2 and Platypus GNU/Unix based systems

Description

This function takes a multisample VCF and splits into multiple VCFS for each sample

Usage

split_vcf(
  bin_path = "tools/bcftools/bcftools",
  vcf = "",
  verbose = FALSE,
  output_dir = ""
)

Arguments

bin_path	Required Path to bcftools binary. Default "tools/bcftools/bcftools"
vcf	Required Path to VCF file to split.
verbose	Optional Enables progress messages. Default False.
output_dir	Optional Path to the output directory.

TearsWillFall/variantCall documentation built on Oct. 15, 2021, 8:51 p.m.