process_maf: This function processes a MAF file This function takes the...
In TearsWillFall/variantCall: An implementation of a wrapper for variant calling using MuTECT2 and Platypus GNU/Unix based systems
Description
This function processes a MAF file
This function takes the path to a MAF file and processes the variant infomation
contained within it
Usage
1
process_maf(maf = "", sample_data = "", gen_data = "")
Arguments
maf
Path to MAF file
sample_data
Path to file with sample information
gen_data
Path to file with gen to take into account
generate_file
Generate an output file. Default TRUE
output_name
Output file name without extension. Default "merged"
output_dir
Path to output directory.
threads
Number of threads to use.
TearsWillFall/variantCall documentation built on Oct. 15, 2021, 8:51 p.m.
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Description
This function processes a MAF file This function takes the path to a MAF file and processes the variant infomation contained within it
Usage
1 | process_maf(maf = "", sample_data = "", gen_data = "")
|
Arguments
maf |
Path to MAF file |
sample_data |
Path to file with sample information |
gen_data |
Path to file with gen to take into account |
generate_file |
Generate an output file. Default TRUE |
output_name |
Output file name without extension. Default "merged" |
output_dir |
Path to output directory. |
threads |
Number of threads to use. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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