plot_evolutionary_distance: This function generates a plot of reltionship between samples...

In TearsWillFall/variantCall: An implementation of a wrapper for variant calling using MuTECT2 and Platypus GNU/Unix based systems

Description

This function generates a plot of reltionship between samples based on Hammering Distance computed as the number of bins thats differ between samples This function takes the path to the directory with CLONET output, as well as a tab separated file with sample info and generates a plot of celularity and ploidy levels in the samples

Usage

plot_evolutionary_distance(
  cn_call_data = "",
  sample_data = "",
  ref_bins = "",
  output_dir = "",
  threads = 3
)

Arguments

cn_call_data	Path to segment data with cn calls
sample_data	Path to file with sample info
ref_bins	Path to reference genome binned into 100kb/500kb bin
output_dir	Path to output directory.
threads	Number of threads to use.

TearsWillFall/variantCall documentation built on Oct. 15, 2021, 8:51 p.m.