generate_CLONET_sample_info: This function generates a sample_info file for CLONET...
In TearsWillFall/variantCall: An implementation of a wrapper for variant calling using MuTECT2 and Platypus GNU/Unix based systems
Description
This function takes the path to the directory with processed SNPS generated with format_SNP_data function
and generates a tab separated file with samples info ready to use for CLONET pipeline.
Usage
1
generate_CLONET_sample_info(snp_dir = "", patient_id = "", output_dir = "")
Arguments
snp_dir
Path to formated SNP data dir.
patient_id
Patient ID. Default Patient
output_dir
Path to output directory.
TearsWillFall/variantCall documentation built on Oct. 15, 2021, 8:51 p.m.
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Description
This function takes the path to the directory with processed SNPS generated with format_SNP_data function and generates a tab separated file with samples info ready to use for CLONET pipeline.
Usage
1 | generate_CLONET_sample_info(snp_dir = "", patient_id = "", output_dir = "")
|
Arguments
snp_dir |
Path to formated SNP data dir. |
patient_id |
Patient ID. Default Patient |
output_dir |
Path to output directory. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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