FamilyInfoPrep: Mapping Realtionship to unique nanoIDs

In VilainLab/Nanotator: Next generation structural variant annotation and classification

Mapping Realtionship to unique nanoIDs

Description

Mapping Realtionship to unique nanoIDs

Usage

FamilyInfoPrep(
  Samplecodes = "X:/Hayks_Materials/BNG/Projects/nanotatoR_sample_codes.csv",
  mergeKey = "X:/Hayks_Materials/BNG/Projects/MergeKey.csv",
  outMode = c("Text", "dataframe"),
  outpath = "X:/Hayks_Materials/BNG/Projects/VAP_DLE1_solo_SMAPs/Merged"
)

Arguments

Samplecodes	character. File containing relations and IDs associated to them.
mergeKey	character. File containing sample ID and relation.
outMode	character. The ouput mode. Choices, dataframe or Text.
outpath	character. Path where the dual labelled merged samples are kept. Is mandatory if outMode is Text.

Value

Text files containg merged smaps from different samples

Examples

FamilyInfoPrep(
Samplecodes = system.file("extdata", "nanotatoR_sample_codes.csv", package="nanotatoR"),
mergeKey = system.file("extdata", "nanotatoR_control_sample_codes.csv", package="nanotatoR"),
outMode = c("dataframe"))

VilainLab/Nanotator documentation built on Aug. 2, 2024, 8:45 p.m.