gtr_gene: Extracting genes from gtr database NCBI.

In VilainLab/Nanotator: Next generation structural variant annotation and classification

Extracting genes from gtr database NCBI.

Description

Extracting genes from gtr database NCBI.

Usage

gtr_gene(terms, gtr, url_gtr, downloadGTR = TRUE)

Arguments

terms	Single or Multiple Terms.
gtr	character gtr database location.
url_gtr	character url for gtr database.
downloadGTR	boolean If TRUE, download the gtr database. Default FALSE.

Value

Dataframe returned containing gene lists in entrezid and Gene Symbols, and terms associated with it

Examples

terms="Liver cirrhosis"
gtr = system.file("extdata", "gtrDatabase.txt", package="nanotatoR")
ge <- gtr_gene(terms = terms,gtr = gtr, downloadGTR = FALSE)

VilainLab/Nanotator documentation built on Aug. 2, 2024, 8:45 p.m.