phenoextractHPO_mod: Extract the genes related to a disease or disease alias from...

In VilainLab/Nanotator: Next generation structural variant annotation and classification

Extract the genes related to a disease or disease alias from HPO database.

Description

Extract the genes related to a disease or disease alias from HPO database.

Usage

phenoextractHPO_mod(keyword, localPDB.path)

Arguments

keyword	character. character string: keyword, to search a disease, a clinical feature, or a phenotype.
localPDB.path	character. the path of localized public data bases. The default value is set in the working directory.

Value

subset of HPO and extract the genes and alias for a disease(phenotype), or a clinical feature. Function modified from pheno_extract_HPO function VarFromPDB.

Examples

HPO.phenotype = phenoextractHPO_mod("retinoblastoma",
localPDB.path = system.file("extdata", "localPDB", package="nanotatoR"))

VilainLab/Nanotator documentation built on Aug. 2, 2024, 8:45 p.m.