phenoextractHPO_mod: Extract the genes related to a disease or disease alias from...
In VilainLab/Nanotator: Next generation structural variant annotation and classification
Description
Usage
Arguments
Value
Examples
View source: R/phenoextract_mod.r
Description
Extract the genes related to a disease or disease alias from HPO database.
Usage
1
phenoextractHPO_mod(keyword, localPDB.path)
Arguments
keyword
character. character string: keyword,
to search a disease, a clinical feature, or a phenotype.
localPDB.path
character. the path of
localized public data bases. The default value is set in the working
directory.
Value
subset of HPO and
extract the genes and alias for a disease(phenotype),
or a clinical feature. Function modified from
pheno_extract_HPO function VarFromPDB.
Examples
1
2
HPO.phenotype = phenoextractHPO_mod("retinoblastoma",
localPDB.path = system.file("extdata", "localPDB", package="nanotatoR"))
VilainLab/Nanotator documentation built on Oct. 9, 2021, 8:59 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/phenoextract_mod.r
Description
Extract the genes related to a disease or disease alias from HPO database.
Usage
1 | phenoextractHPO_mod(keyword, localPDB.path)
|
Arguments
keyword |
character. character string: keyword, to search a disease, a clinical feature, or a phenotype. |
localPDB.path |
character. the path of localized public data bases. The default value is set in the working directory. |
Value
subset of HPO and extract the genes and alias for a disease(phenotype), or a clinical feature. Function modified from pheno_extract_HPO function VarFromPDB.
Examples
1 2 | HPO.phenotype = phenoextractHPO_mod("retinoblastoma",
localPDB.path = system.file("extdata", "localPDB", package="nanotatoR"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.