buildrunBNBedFiles: Reads BED files to produce bionano Bed files

In VilainLab/Nanotator: Next generation structural variant annotation and classification

Reads BED files to produce bionano Bed files

Description

Reads BED files to produce bionano Bed files

Usage

buildrunBNBedFiles(
  bedFile,
  returnMethod = c("Text", "dataFrame"),
  outdir,
  fname
)

Arguments

bedFile	character. Path to UCSC Bed File.
returnMethod	character. Path to output directory.
outdir	character. Path to output directory.
fname	character. Output File name.

Value

Data Frame or text file. Contains the gene information.

Examples

bedFile <- system.file("extdata", "HomoSapienGRCH19_lift37.bed", 
      package="nanotatoR")
bed<-buildrunBNBedFiles(bedFile,returnMethod="dataFrame")

VilainLab/Nanotator documentation built on Aug. 2, 2024, 8:45 p.m.