readSMap: Reads SMAP files to extract information from SVMerge

In VilainLab/Nanotator: Next generation structural variant annotation and classification

Description

Reads SMAP files to extract information from SVMerge

Usage

readSMap(smap, smapdata, input_fmt_smap = c("Text", "dataFrame"))

Arguments

smap	character. Path to SMAP file.
smapdata	dataframe. variable for smap dataset.
input_fmt_smap	character. input format for smap text or dataframe.

Value

Data Frame or text file. Contains the SMAP information.

Examples

smapName="NA12878_Q.S_VAP_SVmerge_solo5.txt"
smap = system.file("extdata", smapName, package="nanotatoR")
readSMap(smap, input_fmt_smap = "Text")

VilainLab/Nanotator documentation built on Oct. 9, 2021, 8:59 p.m.