makeInternalBNDatabase: Merges Solo SV files to one common SV file

In VilainLab/Nanotator: Next generation structural variant annotation and classification

Merges Solo SV files to one common SV file

Description

Merges Solo SV files to one common SV file

Usage

makeInternalBNDatabase(
  path,
  pattern,
  outpath,
  fname,
  dbOutput = c("dataframe", "text")
)

Arguments

path	character. Path to the solo files.
pattern	character. file name pattern for solo files.
outpath	character. file path for the output file.
fname	character. file name for the output file.
dbOutput	character. Output option database or text.

Value

Text file containing all the solo SMAP files.

Examples

path <- system.file("extdata", "Bionano_config/", package = "nanotatoR")
pattern <- "_hg19.txt"
mergedSmap <- makeInternalBNDatabase(path = path, 
   pattern = pattern, dbOutput = "dataframe")
mergedSmap[1,]

VilainLab/Nanotator documentation built on Aug. 2, 2024, 8:45 p.m.