makeInternalBNDatabase: Merges Solo SV files to one common SV file

Description Usage Arguments Value Examples

View source: R/cohortDB_comp.r

Description

Merges Solo SV files to one common SV file

Usage

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makeInternalBNDatabase(
  path,
  pattern,
  outpath,
  fname,
  dbOutput = c("dataframe", "text")
)

Arguments

path

character. Path to the solo files.

pattern

character. file name pattern for solo files.

outpath

character. file path for the output file.

fname

character. file name for the output file.

dbOutput

character. Output option database or text.

Value

Text file containing all the solo SMAP files.

Examples

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path <- system.file("extdata", "Bionano_config/", package = "nanotatoR")
pattern <- "_hg19.txt"
mergedSmap <- makeInternalBNDatabase(path = path, 
   pattern = pattern, dbOutput = "dataframe")
mergedSmap[1,]

VilainLab/Nanotator documentation built on Oct. 9, 2021, 8:59 p.m.