reading_GTR: Reading and parsing gtr database.

In VilainLab/Nanotator: Next generation structural variant annotation and classification

Reading and parsing gtr database.

Description

Reading and parsing gtr database.

Usage

reading_GTR(
  gtr,
  downloadGTR,
  url_gtr = "ftp://ftp.ncbi.nlm.nih.gov/pub/GTR/data/test_condition_gene.txt"
)

Arguments

gtr	character gtr database location.
downloadGTR	logical if true, downloads gtr database, . and store data in the gtr location, else reads dataset from gtr location.
url_gtr	character url for gtr database.

Value

Dataframe representation of gtr database.

Examples

a <- reading_GTR(
   gtr  = system.file("extdata", "gtrDatabase.txt", package="nanotatoR"),
   downloadGTR = FALSE)

VilainLab/Nanotator documentation built on Aug. 2, 2024, 8:45 p.m.