Description Usage Arguments Value Examples
Extracting genes from clinvar database NCBI.
1 | clinvar_gene(terms, clinvar, downloadClinvar, omimID = NULL)
|
terms |
Single or Multiple Terms. |
clinvar |
character clinvar database location. |
downloadClinvar |
boolean If TRUE, download the gtr database. Default FALSE. |
omimID |
numeric Omim Id for disease. |
Dataframe returned containing gene lists in entrezid and Gene Symbols, and terms associated with it
1 2 3 4 5 6 | terms="Liver cirrhosis"
clinvar = system.file("extdata", "localPDB/", package="nanotatoR")
downloadClinvar = FALSE
ge <- clinvar_gene(terms = terms, clinvar = clinvar,
downloadClinvar = downloadClinvar,
omimID = "OMIM:118980")
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