Files in ababaian/palmid
Viral RNA Dependent RNA Polymerase Analysis Suite
.Rbuildignore
.dockerignore
.github/workflows/main.yml
.gitignore
DESCRIPTION
Dockerfile
LICENSE
NAMESPACE
NEWS.md
R/PlotDistro.R
R/PlotGeo.R
R/PlotGeo2.R
R/PlotGeoReport.R
R/PlotID.R
R/PlotID2.R
R/PlotLengths.R
R/PlotOrgn.R
R/PlotOrgnScatter.R
R/PlotPP.R
R/PlotPhy.R
R/PlotPhyBar.R
R/PlotPhyMsa.R
R/PlotPhyReport.R
R/PlotProReport.R
R/PlotProjExpr.R
R/PlotReport.R
R/PlotSTAT.R
R/PlotSraExpr.R
R/PlotTax.R
R/PlotTaxHist.R
R/PlotTaxReport.R
R/PlotTimeline.R
R/SerratusConnect.R
R/fev2df.R
R/geoFilter.R
R/geoFilter2.R
R/get.nickname.R
R/get.palmSra.R
R/get.palmTax.R
R/get.palmTax2.R
R/get.proPhy.R
R/get.proTax.R
R/get.proTax2.R
R/get.sOTU.R
R/get.sra.R
R/get.sraBio.R
R/get.sraBio2.R
R/get.sraDate.R
R/get.sraGeo.R
R/get.sraOrgn.R
R/get.sraProj.R
R/get.sraSTAT.R
R/identityWordcount.R
R/linkBLAST.R
R/linkDB.R
R/linkGB.R
R/make_bg_data.R
R/normalizeWordCount.R
R/palmdb.R
R/palmscan.df.R
R/read.fev.R
R/read.pro.R
R/standardizeWordCount.R
R/text_summary.R
R/waxsys.msa.R
R/waxsys.palm.sra.R
R/waxsys.palmprint.R
R/waxsys.pro.df.R
R/waxsys.stat.sra.R
R/waxsys.tree.df.R
R/waxsys.tree.phy.R
README.md
cran-comments.md
data/palmdb.RData
data/waxsys.msa.RData
data/waxsys.palm.sra.RData
data/waxsys.palmprint.RData
data/waxsys.pro.df.RData
data/waxsys.stat.sra.RData
data/waxsys.tree.df.RData
data/waxsys.tree.phy.RData
img/stat_legend.png
img/stat_legend.svg
img/tax_legend.png
img/tax_legend.svg
img/waxsys_geo.png
img/waxsys_orgn.png
img/waxsys_pp.png
img/waxsys_pro.png
img/waxsys_tax.png
inst/extdata/borna.fa
inst/extdata/borna.fev
inst/extdata/borna.input.fa
inst/extdata/borna.msa.fa
inst/extdata/borna.phy
inst/extdata/borna.pro
inst/extdata/borna.stats
inst/extdata/borna.trim.fa
inst/extdata/borna.txt
inst/extdata/cov.ps.txt
inst/extdata/hz_sample.fa
inst/extdata/waxsys.fa
inst/extdata/waxsys.fev
inst/extdata/waxsys.input.fa
inst/extdata/waxsys.msa.fa
inst/extdata/waxsys.phy
inst/extdata/waxsys.pro
inst/extdata/waxsys.stats
inst/extdata/waxsys.trim.fa
inst/extdata/waxsys.tsv
inst/extdata/waxsys.txt
inst/extdata/waxsys_pp.png
inst/extdata/waxsys_pro.png
inst/extdata/waxsys_tax.png
man/PlotDistro.Rd
man/PlotGeo.Rd
man/PlotGeo2.Rd
man/PlotGeoReport.Rd
man/PlotID.Rd
man/PlotID2.Rd
man/PlotLengths.Rd
man/PlotOrgn.Rd
man/PlotOrgnScatter.Rd
man/PlotPP.Rd
man/PlotPhy.Rd
man/PlotPhyBar.Rd
man/PlotPhyMsa.Rd
man/PlotPhyReport.Rd
man/PlotProReport.Rd
man/PlotProjExpr.Rd
man/PlotReport.Rd
man/PlotSTAT.Rd
man/PlotSraExpr.Rd
man/PlotTax.Rd
man/PlotTaxHist.Rd
man/PlotTaxReport.Rd
man/PlotTimeline.Rd
man/SerratusConnect.Rd
man/fev2df.Rd
man/geoFilter.Rd
man/geoFilter2.Rd
man/get.nickname.Rd
man/get.palmSra.Rd
man/get.palmTax.Rd
man/get.palmTax2.Rd
man/get.proPhy.Rd
man/get.proTax.Rd
man/get.proTax2.Rd
man/get.sOTU.Rd
man/get.sra.Rd
man/get.sraBio.Rd
man/get.sraBio2.Rd
man/get.sraDate.Rd
man/get.sraGeo.Rd
man/get.sraOrgn.Rd
man/get.sraSTAT.Rd
man/identityWordcount.Rd
man/linkBLAST.Rd
man/linkDB.Rd
man/linkGB.Rd
man/make_bg_data.Rd
man/normalizeWordcount.Rd
man/palmdb.Rd
man/read.fev.Rd
man/read.pro.Rd
man/standardizeWordcount.Rd
man/text_summary.Rd
man/waxsys.msa.Rd
man/waxsys.palm.sra.Rd
man/waxsys.palmprint.Rd
man/waxsys.pro.df.Rd
man/waxsys.stat.sra.Rd
man/waxsys.tree.df.Rd
man/waxsys.tree.phy.Rd
palmid.Rmd
scripts/build_stat_tax.Rmd
scripts/fev2tsv.py
scripts/palmid.R
scripts/palmid.sh
