Files in aertslab/SCopeLoomR

Build .loom files (compatible with SCope) and extract data from .loom files.

R/data_exports.R R/loom.R R/vendor/dynwrap.R README.md man/add_annotated_clustering.Rd man/add_annotation_by_cluster_annotation_mapping_df.Rd man/add_clustering.Rd man/add_clustering_markers.Rd man/add_col_attr.Rd man/add_default_embedding.Rd man/add_embedding.Rd man/add_embedding_from_dyno.Rd man/add_fbgn.Rd man/add_global_attr.Rd man/add_global_md_annotation.Rd man/add_global_md_clustering.Rd man/add_global_md_clustering_kv.Rd man/add_global_md_embedding.Rd man/add_global_md_metric.Rd man/add_global_md_regulon_thresholds.Rd man/add_hierarchy.Rd man/add_matrix.Rd man/add_regulons.Rd man/add_regulons_AUC.Rd man/add_row_attr.Rd man/add_seurat_clustering.Rd man/append_clustering_update_ca.Rd man/build_loom.Rd man/check_global_meta_data.Rd man/check_missings.Rd man/chunk_points.Rd man/clear_global_meta_data.Rd man/close_loom.Rd man/col_attrs_exists_by_key.Rd man/compress_gzb64.Rd man/convert_to_loom_v3_spec.Rd man/create_cluster_annotation.Rd man/create_hierarchy.Rd man/create_trajectory.Rd man/create_trajectory_from_dyno.Rd man/create_trajectory_from_monocle.Rd man/decompress_gzb64.Rd man/finalize.Rd man/flush.Rd man/get_all_cluster_markers.Rd man/get_cell_annotation.Rd man/get_cell_ids.Rd man/get_cell_mask_by_cluster_name.Rd man/get_cluster_dgem_by_name.Rd man/get_cluster_info_by_cluster_name.Rd man/get_cluster_info_by_id.Rd man/get_cluster_markers.Rd man/get_cluster_names.Rd man/get_clustering_by_id.Rd man/get_clustering_idx_by_cluster_name.Rd man/get_clusterings.Rd man/get_clusterings_with_name.Rd man/get_col_attr_by_key.Rd man/get_default_embedding.Rd man/get_dgem.Rd man/get_dspace.Rd man/get_dtype.Rd man/get_embedding_by_name.Rd man/get_embeddings.Rd man/get_genes.Rd man/get_global_attr.Rd man/get_global_md_clustering_by_id.Rd man/get_global_md_clustering_by_name.Rd man/get_global_md_clustering_info_by_name.Rd man/get_global_meta_data.Rd man/get_next_embedding_id.Rd man/get_regulon_thresholds.Rd man/get_regulons.Rd man/get_regulons_AUC.Rd man/get_row_attr_by_key.Rd man/get_seurat_clustering_resolutions.Rd man/global_meta_data_exists.Rd man/hdf5_utf8_encode.Rd man/hierarchy_exists.Rd man/init_global_md_embeddings.Rd man/init_global_meta_data.Rd man/is_base64_encoded.Rd man/is_gzipped.Rd man/is_json.Rd man/is_order_conserved.Rd man/list_clusterings_names.Rd man/lookup_all_global_attr.Rd man/lookup_loom.Rd man/open_loom.Rd man/remove_col_attr.Rd man/remove_global_attr.Rd man/remove_row_attr.Rd man/sce.Rd man/tSNE_expr.Rd man/update_cluster_descriptions_by_cluster_annotation_mapping_df.Rd man/update_col_attr.Rd man/update_global_attr.Rd man/update_global_meta_data.Rd man/update_row_attr.Rd vignettes/SCopeLoomR_Seurat_tutorial.Rmd vignettes/SCopeLoomR_tutorial.Rmd