cpgIslands: CpG islands (reference data)
In andigoni/MeinteR: A framework to prioritize DNA methylation aberrations based on conformational and cis-regulatory element enrichment
Description
List of 27,718 human CpG islands with their corresponding GC-content and observed/expected ratio in chromosomes chr1..22,X,Y (hg19). The list is obtained from the cpgIslandExt table of UCSC Table Browser.
Format
chromCpG island chromosome
chromStartCpG island chromosome start position
chromEndCpG island chromosome end position
perGCGC-content i.e. Percentage of the CpG island that is C or G
obsExpObserved/expected ratio i.e.: Number of CpG * N / (Number of C * Number of G), N = Sequence length
andigoni/MeinteR documentation built on Oct. 1, 2021, 9:33 p.m.
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Description
List of 27,718 human CpG islands with their corresponding GC-content and observed/expected ratio in chromosomes chr1..22,X,Y (hg19). The list is obtained from the cpgIslandExt table of UCSC Table Browser.
Format
chromCpG island chromosome
chromStartCpG island chromosome start position
chromEndCpG island chromosome end position
perGCGC-content i.e. Percentage of the CpG island that is C or G
obsExpObserved/expected ratio i.e.: Number of CpG * N / (Number of C * Number of G), N = Sequence length
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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