cpgIslands: CpG islands (reference data)

Description Format

Description

List of 27,718 human CpG islands with their corresponding GC-content and observed/expected ratio in chromosomes chr1..22,X,Y (hg19). The list is obtained from the cpgIslandExt table of UCSC Table Browser.

Format

chrom

CpG island chromosome

chromStart

CpG island chromosome start position

chromEnd

CpG island chromosome end position

perGC

GC-content i.e. Percentage of the CpG island that is C or G

obsExp

Observed/expected ratio i.e.: Number of CpG * N / (Number of C * Number of G), N = Sequence length


andigoni/MeinteR documentation built on Aug. 20, 2019, 8:43 a.m.