importLimma: Imports the results of differential methylation analyses...
In andigoni/MeinteR: A framework to prioritize DNA methylation aberrations based on conformational and cis-regulatory element enrichment
Description
Usage
Arguments
Value
Description
Imports the results of differential methylation analyses exported by limma
Usage
1
importLimma(ltop.obj, platform = "hm450k", sortBy = "adj.P.Val")
Arguments
ltop.obj
Output of limma differential analysis. The output data frame produced by the limma::topTable function.
platform
A string corresponding to the human methylation array. Possible values are "hm27k", "hm450k" and "EPIC" (default:hm450k)
sortBy
The criterion for selecting probes of the MArrayLM object. Possible values are: "logFC", "P.Value", "adj.P.Val"
Value
df A well-formatted data frame to be used as input to the MeinteR workflow.
andigoni/MeinteR documentation built on Oct. 1, 2021, 9:33 p.m.
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Description Usage Arguments Value
Description
Imports the results of differential methylation analyses exported by limma
Usage
1 | importLimma(ltop.obj, platform = "hm450k", sortBy = "adj.P.Val")
|
Arguments
ltop.obj |
Output of |
platform |
A string corresponding to the human methylation array. Possible values are "hm27k", "hm450k" and "EPIC" (default:hm450k) |
sortBy |
The criterion for selecting probes of the MArrayLM object. Possible values are: "logFC", "P.Value", "adj.P.Val" |
Value
df A well-formatted data frame to be used as input to the MeinteR workflow.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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