findQuads: Find quadruplexes in sequences centered at CpG sites

In andigoni/MeinteR: A framework to prioritize DNA methylation aberrations based on conformational and cis-regulatory element enrichment

Description

This function will detect DNA sequence patterns that likely fold into G-quadruplex structures.

Usage

findQuads(bed.data, offset = 100)

Arguments

bed.data	A data frame containing input bed-formatted data
offset	Number of nucleotides expanded in each direction (default:100, max:1000)

Value

A DNAString subject with the identified G-quadruplexes, their length and relative coordinates

Number of G-quadruplexes per sequence (input to 'meinter' function)

andigoni/MeinteR documentation built on Oct. 1, 2021, 9:33 p.m.