sample: Sample DNA methylation dataset (sample data)

In andigoni/MeinteR: A framework to prioritize DNA methylation aberrations based on conformational and cis-regulatory element enrichment

Description

A data frame with 5840 methylation sites containing the chromosomal position of the methylation sites and the corresponding delta beta values.

Format

The dataset has the following 5 variables:

Chromosome

A factor with valid values chr1 to chr22, chrX, chrY, chrM

Start

Start position of the methylation site

End

End position of the methylation site

Strand

Strand of the methylation site, either + or -

Differences

A numeric vector with the (group1 - group2) methylation value for each CpG site.

Examples

#Distribution of the methylation values
plot(sample[,5])

andigoni/MeinteR documentation built on Oct. 1, 2021, 9:33 p.m.