validateBed: Validate format of the input bed data
In andigoni/MeinteR: A framework to prioritize DNA methylation aberrations based on conformational and cis-regulatory element enrichment
Description
Usage
Arguments
Value
Description
Validates input methylation data. Checks the presence of the chr, start, end, score columns.
If column 'strand' is not set then '+' strand is assumed.
Cleans rows with empty cells and sets numeric format to the start, end and score columns.
Usage
1
validateBed(bed.data, omit.na = TRUE)
Arguments
bed.data
A data frame containing input bed-formatted data
omit.na
Omit rows with empty cells (default:TRUE)
Value
A well-formatted data frame
andigoni/MeinteR documentation built on Oct. 1, 2021, 9:33 p.m.
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Description Usage Arguments Value
Description
Validates input methylation data. Checks the presence of the chr, start, end, score columns. If column 'strand' is not set then '+' strand is assumed. Cleans rows with empty cells and sets numeric format to the start, end and score columns.
Usage
1 | validateBed(bed.data, omit.na = TRUE)
|
Arguments
bed.data |
A data frame containing input bed-formatted data |
omit.na |
Omit rows with empty cells (default:TRUE) |
Value
A well-formatted data frame
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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