plotCpG: Plot G+C-content and observed/expected ratio.
In andigoni/MeinteR: A framework to prioritize DNA methylation aberrations based on conformational and cis-regulatory element enrichment
Description
Usage
Arguments
Value
Description
Generates density plots of the G+C content and
observed/expected CpG ratio for the input dataset and the human genome CpG islands
Usage
1
Arguments
bed.data
A data frame containing input bed-formatted data
offset
Number of nucleotides expanded in each direction (default:200, min:20 max:1000)
Value
1/ A data frame containing the G+C content (percentage of island that is C or G)
and ratio of observed (CpG number) to expected(Number of C* Number of G/sequence length)
2/ Density plot of the G+C-content
3/ Density plot of the observed/expected ratio
andigoni/MeinteR documentation built on Oct. 1, 2021, 9:33 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Generates density plots of the G+C content and observed/expected CpG ratio for the input dataset and the human genome CpG islands
Usage
1 |
Arguments
bed.data |
A data frame containing input bed-formatted data |
offset |
Number of nucleotides expanded in each direction (default:200, min:20 max:1000) |
Value
1/ A data frame containing the G+C content (percentage of island that is C or G) and ratio of observed (CpG number) to expected(Number of C* Number of G/sequence length)
2/ Density plot of the G+C-content
3/ Density plot of the observed/expected ratio
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.