loadSeqGEO: Reformat methylation sequencing data fetched from GEO
In andigoni/MeinteR: A framework to prioritize DNA methylation aberrations based on conformational and cis-regulatory element enrichment
Description
Usage
Arguments
Value
Description
Transforms sequencing data into bed-formatted files. Valid for per sample usage.
Usage
1
loadSeqGEO(file.path, cov = 10, chroms = NULL)
Arguments
file.path
Local folder of the bed.gz file
cov
Minimum read coverage (default:10)
chroms
A vector of chromosome vector to be included in the analysis (default:ALL)
Value
A valid bed-formatted data frame
andigoni/MeinteR documentation built on Oct. 1, 2021, 9:33 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Transforms sequencing data into bed-formatted files. Valid for per sample usage.
Usage
1 | loadSeqGEO(file.path, cov = 10, chroms = NULL)
|
Arguments
file.path |
Local folder of the bed.gz file |
cov |
Minimum read coverage (default:10) |
chroms |
A vector of chromosome vector to be included in the analysis (default:ALL) |
Value
A valid bed-formatted data frame
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.