filterByProm: Filter by promoters

Description Usage Arguments Value

View source: R/misc.R

Description

Selects genomic coordinates than are included in promoters based on the UCSC hg19 gene coordinates.

Usage

1
filterByProm(input.data, up.tss, down.tss)

Arguments

input.data

A data frame containing input data in bed format

up.tss

Number of nucleotides upstream transcription start site

down.tss

Number of nucleotides downstream transcription start site

Value

A data frame with the CpG sites located in promoter regions


andigoni/MeinteR documentation built on Aug. 20, 2019, 8:43 a.m.