filterByProm: Filter by promoters
In andigoni/MeinteR: A framework to prioritize DNA methylation aberrations based on conformational and cis-regulatory element enrichment
Description
Usage
Arguments
Value
Description
Selects genomic coordinates included in promoters based on the UCSC hg19 gene coordinates.
Usage
1
filterByProm(input.data, up.tss, down.tss)
Arguments
input.data
A data frame containing input data in bed format
up.tss
Number of nucleotides upstream transcription start site
down.tss
Number of nucleotides downstream transcription start site
Value
A data frame with the CpG sites located in promoter regions
andigoni/MeinteR documentation built on Oct. 1, 2021, 9:33 p.m.
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Description Usage Arguments Value
Description
Selects genomic coordinates included in promoters based on the UCSC hg19 gene coordinates.
Usage
1 | filterByProm(input.data, up.tss, down.tss)
|
Arguments
input.data |
A data frame containing input data in bed format |
up.tss |
Number of nucleotides upstream transcription start site |
down.tss |
Number of nucleotides downstream transcription start site |
Value
A data frame with the CpG sites located in promoter regions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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