plotTF: Create barplot of the identified transcription factor binding...
In andigoni/MeinteR: A framework to prioritize DNA methylation aberrations based on conformational and cis-regulatory element enrichment
Description
Usage
Arguments
Value
Description
Generates an overlayed barplot of the results exported by the 'findTFBS' function.
The bar plot visualises the most frequent transription factors with respect
to the total number of occurrences and the number of sequences that contain
these trascription factors.
Usage
1
Arguments
df
The data frame exported by the 'findTFBS' function
topTF
Integer corresponding to the number of the most frequent trascription
factors to be displayed (default:10)
Value
1/ A barplot with the 'topTF' most frequent transcription factors
2/ A barplot with the number of transcription factors per class
3/ A scatterplot comparing the observed and expected number of transcription
factors per class
andigoni/MeinteR documentation built on Oct. 1, 2021, 9:33 p.m.
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Description Usage Arguments Value
Description
Generates an overlayed barplot of the results exported by the 'findTFBS' function. The bar plot visualises the most frequent transription factors with respect to the total number of occurrences and the number of sequences that contain these trascription factors.
Usage
1 |
Arguments
df |
The data frame exported by the 'findTFBS' function |
topTF |
Integer corresponding to the number of the most frequent trascription factors to be displayed (default:10) |
Value
1/ A barplot with the 'topTF' most frequent transcription factors
2/ A barplot with the number of transcription factors per class
3/ A scatterplot comparing the observed and expected number of transcription factors per class
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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