test.data: Test dataset with chromosomal position of the methylated...

In andigoni/MeinteR: A framework to prioritize DNA methylation aberrations based on conformational and cis-regulatory element enrichment

Description

A valid and well-formatted sample dataset containing 401 differentially methylated data with |delta beta-values|>0.3.

Format

The dataset has the following 5 variables:

chr

A factor with valid values chr1 to chr22, chrX, chrY and chrM

start

Start position of the methylation site

end

End position of the methylation site

score

A numeric vector with the (group1 - group2) methylation value for each methylation site.

strand

Strand of the methylation site, either + or -

Examples

#Distribution of the methylation values
plot(test.data$score)

andigoni/MeinteR documentation built on Oct. 1, 2021, 9:33 p.m.