R/data.R

In arendsee/synder: Use Synteny to Filter Genomic Search

#' Toy dataset for synder
#'
#' Contains 4 files:
#' \enumerate{
#'     \item synmap - hand made synteny map with seqinfo for both sides
#'     \item qgff   - set of intervals relative to the query
#'     \item tgff   - set of intervals relative to the target
#' }
#' 
#' @format List
"toy"

#' Intro vignette dataset 1
#'
#' Contains 2 files:
#' \enumerate{
#'     \item synmap - simple linear synteny map with seqinfo for both sides
#'  } 
#' 
#' @format List
"intro_1"

#' Intro vignette dataset 2
#'
#' Similar to intro_1, but with an inversion
#'
#' Contains 2 files:
#' \enumerate{
#'     \item synmap - simple linear synteny map with seqinfo for both sides
#'  } 
#'
#' @format List
"intro_2"

#' Yeast Ty1 mobile genetic element dataset
#'
#' Contains 2 files:
#' \enumerate{
#'     \item synmaps - Maps between S. cerivisiae and 7 other yeasts
#'     \item gff     - Positions of Ty1 mobile elements in S. cerivisiae
#'     \item glens   - Table of scaffold lengths for each species
#' }
#' 
#' @format List
"ty1"