alignCDSSetWithAlignedAAsAsGuide: Uses an amino acid multiple sequence alignment to guide the...
In asishallab/GeneFamilies: Analyses different properties of gene families
alignCDSSetWithAlignedAAsAsGuide R Documentation
Uses an amino acid multiple sequence alignment to guide the alignment of
codon sequence 'cds'.
Description
Uses an amino acid multiple sequence alignment to guide the alignment of
codon sequence 'cds'.
Usage
alignCDSSetWithAlignedAAsAsGuide(unaligned.cds.set, aligned.aa.set)
Arguments
'unaligned.cds.set'
an instance of base::list as generated by
seqinr::read.fasta representing the unaligned codon sequences
'aligned.aa.set'
an instance of base::list as generated by
seqinr::read.fasta representing the aligned amino acid sequences used
as guide
Value
An instance of base::list with names being the gene
accessions and values Strings representing the aligned coding-sequences.
asishallab/GeneFamilies documentation built on May 22, 2023, 11:30 a.m.
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| alignCDSSetWithAlignedAAsAsGuide | R Documentation |
Uses an amino acid multiple sequence alignment to guide the alignment of codon sequence 'cds'.
Description
Uses an amino acid multiple sequence alignment to guide the alignment of codon sequence 'cds'.
Usage
alignCDSSetWithAlignedAAsAsGuide(unaligned.cds.set, aligned.aa.set)
Arguments
'unaligned.cds.set' |
an instance of |
'aligned.aa.set' |
an instance of |
Value
An instance of base::list with names being the gene
accessions and values Strings representing the aligned coding-sequences.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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